Data for:
Replication Data for: A revised phylogeny of the New Caledonian endemic genus Troglosiro (Opiliones : Cyphophthalmi : Troglosironidae) with the description of four new species

IQTree_files:
	Input files for IQTree analyses:
		- Troglosironidae_2genes.raxml (Data set containing matrix M2: 51 terminals containing 2 or more loci)
		- Troglosironidae_3genes.raxml (Data set containing matrix M3: 31 terminals containing 3 or 4 loci)
		- Troglosironidae_4genes.raxml (Data set containing matrix M1: 81 terminals containing 1, 2, 3 or 4 loci)
		- Troglosironidae_4genes.partitions.txt (Partitions file for concatenated loci)
		- Troglosironidae_16S.mafft_nooutgroups.fasta (16S rRNA aligned file without outgroups)
		- Troglosironidae_16S.mafft.fasta (16S rRNA aligned file with outgroups)
		- Troglosironidae_18S.mafft.fasta (18S rRNA aligned file with outgroups)
		- Troglosironidae_28S.mafft.fasta (28S rRNA aligned file with outgroups)
		- Troglosironidae_COI.mafft_nooutgroups.fasta (COI  aligned file without outgroups)
		- Troglosironidae_COI.mafft.fasta (COI aligned file with outgroups)

IQTree_results
	Multiple files containing results of different analyses (*.contre *.treefile.tre *.iqtree *.log *best_scheme.nex)
	

POY_files:
	Parameter_files: Files containing parameter sets used in the analyses (e.g., 111, 121, 211, etc.)
	Script_files: Ecxample script files used to run different analyses (*.poy)
	Trees: .tre files for the different analyses after 4 rounds of SATF (Troglosironidae_4genes_Trees.*.3.tre) and results from the reduced data set including taxa with 3 or 4 genes (Matrix M3)
	